computeGeneSetsOverlap	computeGeneSetsOverlap
computeGeneSetsOverlap,GeneSetCollection,character-method	computeGeneSetsOverlap
computeGeneSetsOverlap,GeneSetCollection,ExpressionSet-method	computeGeneSetsOverlap
computeGeneSetsOverlap,list,character-method	computeGeneSetsOverlap
computeGeneSetsOverlap,list,ExpressionSet-method	computeGeneSetsOverlap
filterGeneSets	filterGeneSets
filterGeneSets,GeneSetCollection-method	filterGeneSets
filterGeneSets,list-method	filterGeneSets
gsva	gsva
gsva,dgCMatrix,list-method	GSVA-pkg-deprecated
gsva,ExpressionSet,GeneSetCollection-method	GSVA-pkg-deprecated
gsva,ExpressionSet,list-method	GSVA-pkg-deprecated
gsva,gsvaParam,missing-method	gsva
gsva,HDF5Array,list-method	GSVA-pkg-deprecated
gsva,matrix,GeneSetCollection-method	GSVA-pkg-deprecated
gsva,matrix,list-method	GSVA-pkg-deprecated
gsva,plageParam,missing-method	gsva
gsva,SingleCellExperiment,GeneSetCollection-method	GSVA-pkg-deprecated
gsva,SingleCellExperiment,list-method	GSVA-pkg-deprecated
gsva,ssgseaParam,missing-method	gsva
gsva,SummarizedExperiment,GeneSetCollection-method	GSVA-pkg-deprecated
gsva,SummarizedExperiment,list-method	GSVA-pkg-deprecated
gsva,zscoreParam,missing-method	gsva
gsva-deprecated	gsva-deprecated
GSVA-pkg-deprecated	GSVA-pkg-deprecated
GsvaExprData-class	GsvaExprData-class
GsvaGeneSets-class	GsvaGeneSets-class
GsvaMethodParam-class	GsvaMethodParam-class
gsvaParam	gsvaParam-class
gsvaParam-class	gsvaParam-class
igsva	igsva
plageParam	plageParam-class
plageParam-class	plageParam-class
ssgseaParam	ssgseaParam-class
ssgseaParam-class	ssgseaParam-class
zscoreParam	zscoreParam-class
zscoreParam-class	zscoreParam-class
